CIBSR maintains a library of SPM99, SPM2 and SPM5 scripts used to process MRI data. We also have a manual that is over 150 pages that walks you through these scripts. These are available to CoGent investigators and other interested parties by email request to Fumiko Hoeft.

Examples of SPM Scripts available are:

Batch scripts from reconstruction of GE files to smoothing to individual GLM
Automated script to check quality of data
Other automation tools for various SPM functions
Scripts that create effect-size whole brain maps of your group results
Scripts that create leave-one-out probabilistic maps of your group results
Scripts that perform support vector machine analyses and beyond
Scripts that perform whole brain correlation analyses of different modalities
Scripts that perform various ROI analyses